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Publications

Publications

2017

  1. Sokolova Olga S., Chemeris Angelina, Guo Siyang, Alioto Salvatore L., Gandhi Meghal, Padrick Shae, Pechnikova Evgeniya, David Violaine, Gautreau Alexis, Goode Bruce L. Structural basis of Arp2/3 complex inhibition by GMF, Coronin, and Arpin. Journal of Molecular Biology, 2017, v. 429(2), p. 237-248. Full-text PDF

2016

  1. Glukhov G.S., Popinako A.V., Grizel A.V., Shaitan K.V., Sokolova O.S. The Structure of a Human Voltage-Gated Potassium Kv10.2 Channel which Lacks a Cytoplasmic PAS Domain. Biophysics, 2016, v. 61(4), p. 591-595. Full-text PDF English Full-text PDFRussian
  2. Lyupina Yulia V., Zatsepina Olga G., Serebryakova Marina V., Erokhov Pavel A., Abaturova Svetlana B., Orlova Olga V., Kravchuk Oksana I., Beljelarskaya Svetlana N., Lavrov Andrey I., Sokolova Olga S., Mikhailov Victor S. Proteomics of the 26S proteasome in Spodoptera frugiperda cells infected with the nucleopolyhedrovirus, AcMNPV. Biochimica et Biophysica Acta - Proteins and Proteomics, 2016, v. 1864(6), p. 738-746. Full-text PDF
  3. Maslakova A.A., Sokolova O.S., Orlovsky I.V. Alpha1-antitrypsin-derived C-terminal peptide activity at subnanomolar to micromolar concentrations in human cell lines: a mitogen and a metabolism activator. Molecular Biology of the Cell, 2016 ASCB Annual Meeting Abstracts, v. 27(25), p. 3947-P1169. Full-text PDF
  4. Polevova Svetlana, Kramina Tatiana, Sokolova Olga S. A novel approach to evaluate ultrathin section distortion. Microscopy and analysis, 2016, v. 30(5), p. S8-S10. Full-text PDF
  5. Semenyuk PI, Orlov VN, Sokolova OS, Kurochkina LP. New GroEL-like chaperonin of bacteriophage OBP P. fluorescens suppresses thermal protein aggregation in an ATP-dependent manner. Biochemical Journal, 2016, v. 473(15), p. 2383-2393. Full-text PDF
  6. Only in RussianStanishneva-Konovalova T.B., Derkacheva N.I., Polevova S.V., Sokolova O.S. Role of BAR family proteins in the regulation of cell membrane growth. Acta Naturae, 2016, v. 8(4), p. 121-131. Full-text PDF
  7. Stanishneva-Konovalova Tatiana B., Kelley Charlotte F., Eskin T.L., Messelaar Emily M., Wasserman S.A., Sokolova Olga S., Rodal Avital A. Coordinated autoinhibition of F-BAR domain membrane binding and WASp activation by Nervous Wreck. Proc Natl Acad Sci USA, 2016, v. 113(38), p. E5552-61. Full-text PDF
  8. Volokh O.I., Derkacheva N.I., Studitskiy V.M., Sokolova O.S. Structural Studies of Chromatin Remodeling Factors. Molecular Biology, 2016, v. 50(6), p. 1-13. Full-text PDF English Full-text PDF Russian
  9. Volokh O.I., Hsieh F.K., Karlova M.G., Trifonova E.S., Studitsky V.M., Sokolova O.S. Study of RNA Polymerase Transcription Through Nucleosome Using the Cryo-Electron Microscopy Approach. Moscow University biological sciences bulletin, 2016, v. 71(1), p. 34-38. Full-text PDF

2015

  1. Antonenko Yuri N., Gluhov Grigory S., Firsov Alexander M., Pogozheva Irina D., Kovalchuk Sergey I., Pechnikova Evgeniya V., Kotova Elena A., Sokolova Olga S. Gramicidin A disassembles large conductive clusters of its lysine-substituted derivatives in lipid membranes. Physical Chemistry Chemical Physics, 2015, v. 17, p. 17461-17470. Full-text PDF
  2. Clare Daniel Kofi, Pechnikova Eugenia V., Skurat Eugene V., Makarov Valentin V., Sokolova Olga S., Solovyev Andrey G., and Orlova Elena V. Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy. Structure, 2015, v. 23, p. 1-12. Full-text PDF
  3. Efremov YM, Dokrunova AA, Efremenko AV, Kirpichnikov MP, Shaitan KV, Sokolova OS. Distinct impact of targeted actin cytoskeleton reorganization on mechanical properties of normal and malignant cells. Biochimica et Biophysica Acta - Molecular Cell Research, 2015, v. 1853(11), p. 3117-3125. Full-text PDF
  4. Gaykalova Daria A., Kulaeva Olga I., Olesya Volokh, Shaytan Alexey K., Fu-Kai Hsieh, Kirpichnikov Mikhail P., Sokolova Olga S., Studitsky Vasily M. Structural analysis of nucleosomal barrier to transcription. Proceedings of the National Academy of Sciences of the United States of America, 2015, v. 1129(43), p. E5787-E5795. Full-text PDF
  5. Only in RussianKazakova T.A., Karlova M.G., Sokolova O.S., Maximov G.V. The study of potassium channels in a neuron using a "quantum point-blocker" complex. Russian nanotechnology, 2015, v. 10(3-4), p. 110-114. Full-text PDF
  6. Kelley C.F., Messelaar E.M., Eskin T.L., Wang S., Song K., Vishnia K., Becalska A.N., Shupliakov O., Hagan M.F., Danino D., Sokolova O.S., Nicastro D., Rodal A. Membrane charge directs the outcome of F-BAR domain lipid binding and autoregulation. Cell reports, 2015, v. 13, p. 1-13. Full-text PDF
  7. Maslakova A.A., Telkov M.V., Orlovskiy I.V., Sokolova O.S. Comparative analysis of Serpina1 gene expression in tumor cell lines. Moscow University press, 2015, v. 16(3), p. 26-31. Full-text PDF English Full-text PDFRussian
  8. Only in RussianOrshanskiy I.A, Popinako A.V., Koromyslova A.D., Volokh O.I., Shaitan K.V., Sokolova O.S. Molecular dynamics of interactions of N- and C-terminal domains with autoinhibition and activation of mDia1 formin. Biophysica, 2015, v. 60(3), p. 451-456. Full-text PDF
  9. Only in RussianPechnikova E.V., Kirpichnikov M.P., Sokolova O.S. Radiation damage in cryoelectronic microscopy: is it always harmful? Priroda, 2015, v. 3, p. 25-29. Full-text PDF
  10. Petrova T., Slutskaya E., Boyko K., Sokolova O., Rakitina T., Korzhenevskiy D., Gorbacheva M., Bezsudnova E., Popov V. The localization of Trp residues on the surface of the dodecamer of the aminopeptidase APDkam598 from the archaeon Desulfurococcus kamchatkensis. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2015, v. 71(3), p. 277-285. Full-text PDF
  11. Stanishneva-Konovalova T.B., Sokolova O.S. Molecular dynamics simulations of negatively charged DPPC/DPPI lipid bilayers at two levels of resolution. Computational and Theoretical Chemistry, 2015, v. 1058, p. 61-66. Full-text PDF

2014

  1. Grizel A.V., Gluhov G.S., Sokolova O.S. Mechanisms of Activation of Voltage-Gated Potassium Channels. Acta Naturae, 2014, v. 6(4), p. 56-72. Full-text PDF English Full-text PDFRussian
  2. Grizel A., Popinako A., Kasimova M.A., Stevens L., Karlova M., Moisenovich M.M., Sokolova O.S. Domain Structure and Conformational Changes in rat KV2.1 ion Channel. Journal of Neuroimmune Pharmacology, 2014, v. 9(5), p. 727-39. Full-text PDF
  3. Jansen S., Collins A., Golden L., Sokolova O., Goode B.L. Structure and mechanism of mouse cyclase-associated protein (CAP1) in regulating actin dynamics. Journal of Biological Chemistry, 2014, v. 289(44), p. 30732-42. Full-text PDF
  4. Sokolova O.S., Shaburova O.V., Pechnikova E.V., Shaytan A.K., Krylov S.V., Kiselev N.A., Krylov V.N. Genome packaging in EL and Lin68, two giant phiKZ-like bacteriophages of P. aeruginosa. Virology, 2014, v. 470, p. 472-478. Full-text PDF
  5. Zagidullin V.E., Lukashev E.P., Knox P.P., Seifullina N.Kh., Sokolova O.S., Pechnikova E.V., Lokstein H., Paschenko V.Z. Properties of Hybrid Complexes Composed of Photosynthetic Reaction Centers from the Purple Bacterium Rhodobacter sphaeroides and Quantum Dots in Lecithin Liposomes. Biochemistry, 2014, v. 79(11), p. 1452-1463. Full-text PDF

2013

  1. Becalska A.N., Kelley C.F., Berciu C., Stanishneva-Konovalova T.B., Fu X., Wang S., Sokolova O.S., Nicastro D., Rodal A.A. Formation of membrane ridges and scallops by the F-BAR protein Nervous Wreck. Molecular Biology of the Cell, 2013, v. 24(15), p. 2406-2418. Full-text PDF
  2. Chaudhry F., Breitsprecher D., Little K., Sharov G., Sokolova O., Goode B.L. Srv2/cyclase-associated protein forms hexameric shurikens that directly catalyze actin filament severing by cofilin. Molecular Biology of the Cell, 2013, v. 24(1), p. 31-41. Full-text PDF
  3. Efremov Yu M., Dokrunova A.A., Bagrov D.V., Kudryashova K.S., Sokolova O.S., Shaitan K.V. The effects of confluency on cell mechanical properties. Journal of Biomechanics, 2013, v. 46, p. 1081-1087. Full-text PDF
  4. Paley E.L., Perry G., Sokolova O. Tryptamine Induces Axonopathy and Mitochondriopathy Mimicking Neurodegenerative Diseases via Tryptophanyl-tRNA Deficiency. Current Alzheimer Research, 2014, v. 10(9), p. 987-1004.
  5. Pechnikova E., Stanishneva-Konovalova T.B., Volokh O., Sokolova O. Increase of Contrast for Studies of Bionanoparticles. Nano industry, 2013, v. 5(43), p. 18-25. Full-text PDF
  6. Shaitan K.V., Sokolova O.S., Kasimova M.A., Novoseletskii V.N., Kirpichnikov M.P. Influence of Interionic Interactions on Functional State and Blocker Binding of Voltage-Gated Potassium Channels. Moscow University Biological Sciences Bulletin, 2013, v. 68(1), p. 8-14. Full-text PDF
  7. Ydenberg C.A., Padrick S.B., Sweeney M.O., Gandhi M., Sokolova O., Goode B.L. GMF Severs Actin-Arp2/3 Complex Branch Junctions by a Cofilin-like Mechanism. Current Biology, 2013, v. 23(12), p. 1037-1045. Full-text PDF

2012

  1. Only in Russian Dokrunova A.A., Sokolova O.S. The content of a1-antitrypsin in serum during prostate diseases. Urology, 2012, v. 5, p. 77-80.
  2. Maiti S., Michelot A., Gould C., Blanchoin L., Sokolova O., Goode B.L. Structure and activity of full-length formin mDia1. Cytoskeleton, 2012, v. 69(6), p. 393–405. [abs]Full-text PDF
  3. Moisenovich M.M., Pustovalova O., Shackelford J., Vasiljeva T.V., Druzhinina T.V., Kamenchuk Y.A., Guzeev V.V., Sokolova O.S., Bogush V.G., Debabov V.G., Kirpichnikov M.P., Agapov I.I. Tissue regeneration in vivowithin recombinant spidroin1 scaffolds. J. Biomaterials, 2012, v. 33, p. 3887-3898. Full-text PDF
  4. Only in Russian Popinako A.V., Sokolova O.S. How to predict unknown protein structure. Priroda, 2012, v. 7, p. 33-38. Full-text PDF
  5. Only in Russian Shaytan K.V., Sokolova O.S., Shaytan A.K., Kasimova M.A., Novoseleckiy V.N., Kirpichnikov M.P. The impact of interionic interactions on the voltage-dependent potassium channel during normal function and blockators linkage. Moscow University press, Section Biology. 2012, v.4, p.17-23. Full-text PDF
  6. Only in Russian Sokolova O.S. Nanoparticles of titanium dioxide in various crystalline forms in the composition of sunscreens. Toxicological bulletin, 2012, v. 3, p. 38-42.
  7. Sokolova O.S., Shaitan K.V., Grizel A.V., Popinako A.V., Karlova M.G., Kirpichnikov M.P. Three-Dimensional Structure of Human Voltage-Gated Ion Channel Kv10.2 Studied by Electron Microscopy of Macromolecules and Molecular Modeling. Russian Journal of Bioorganic Chemistry, 2012, v. 38(2), p. 152–158. Full-text PDF
  8. Sokolova O., Ulasova N., Efremov Y., Dokrunova A., Vorontsova O., Bagrov D. Inactivation of Formin Affects Elastic Properties of Eucaryotic Cells. Microscopy and Microanalysis, 2012, v. 18(S2), p. 164-165.
  9. Sokolova O., Volokh O., Hsieh F., Studitsky V., Pechnikova E. 3D Structure of Intermediate Complexes Formed During Transcription Through Nucleosome by RNA Polymerase. Microscopy and Microanalysis, 2012, v. 18(S2), p. 120-121.
  10. Only in Russian Sokolova O.S., Volokh O.I., Stanishneva-Konovalova T.B., Pechnikova E.V. Transmission electron microscopy for studying macromolecular structure. Integral. Interdisciplinary journal, 2012, v. 5, p. 22-25.

2011

  1. Agapov I.I., Moisenovich M.M., Druzhinina T.V., Kamenchuk Y.A., Trofimov K.V., Vasilyeva T.V., Konkov A.S., Arhipova A.Y., Sokolova O.S., Guzeev V.V., Kirpichnikov M.P. Biocomposite scaffolds containing regenerated silkfibroin and nanohydroxyapatite for bone tissue regeneration. Dokl Biochem Biophys., 2011, v. 440, p. 228-230. Full-text PDF
  2. Danilevich V.N., Vasilenko E.A., Pechnikova E.V., Sokolova O.S., and Grishin E.V. Micro- and Nanoparticles of Condensed DNA Formed in PCR with Taq Polymerase and Plasmid DNA as a Template. Microbiology, 2011, v. 80(3), p. 420-431. [abs]Full-text PDF
  3. Karlova M.G., Pischalnikova A.V., Ramonova A.A., Moisenovich M.M., Sokolova O.S., Shaytan K.V. In Vitro Fluorescence Assay to Study the Folding of Kv Ion Channels. Biophysics, 2011, v. 56, p. 243-249. Full-text PDF
  4. Levtsova O.V., Antonov M.Y., Naumenkova T.V., Sokolova O.S. Interaction of zervamicin IIB with lipid bilayers. Molecular dynamics study. Comput Biol Chem., 2011, v. 35(1), p. 34-39. [abs]Full-text PDF
  5. Levtsova O.V., Davletov I.D., Sokolova O.S., Shaytan K.V. Molecular dynamics for the interactions of I-BAR domain of IRSp53 protein with negatively charged membranes. Biophysics, 2011, v. 56, p. 220-224. Full-text PDF
  6. Moisenovich M.M., Pustovalova O.L., Arhipova A.Yu., Vasiljeva T.V., Sokolova O.S., Bogush V.G., Debabov V.G., Sevastianov V.I., Kirpichnikov M.P., Agapov I.I. In vitro and in vivo biocompatibility studies of a recombinant analogue of spidroin 1 scaffolds. J Biomed Mater Res A., 2011, v. 96(1), p. 125-131. Full-text PDF
  7. Pleteneva E.A., Burkalceva M.V., Shaburova O.V., Krilov S.V., Pechnikova E.V., Sokolova O.S., Krilov V.N. TL, the new bacteriophage of Pseudomonas aeruginosa and its application for the search of halo-producing bacteriophages. Genetika, 2011, v. 47(1), p. 1-5. [abs]Full-text PDF
  8. Only in Russian Sokolova O.S., Sharov G.G., Ulasova N.Yu., Pechnikova E.V., Davletov I.D., Dokrunova A.A. Architecture of actin binding proteins and their polymorphism in oncogenesis. "Postgenomic researches and technologies", 2011, p. 464-491.
  9. Only in Russian Ulasova N.Yu., Rubachev P.G., Albegova J.K., Hasigov P.Z., Sokolova O.S. Isolation of actin-binding proteins from human prostate tissue gomogenates. Russian Journal of molecular medicine, 2011, No. 5, p. 46-50.

2010

  1. Only in Russian Agapov I.I., Moisenovich M.M., Vasileva T.V., Pustovalova O.L., Konkov A.S., Archipova A.Yu., Sokolova O.S., Bogush V.G., Sevostyanov V.I., Debabov V.G., Kirpichnikov M.P. Biodegradable matrix of regenerated silk Bombix mori. Reports of the Academy of Sciences, 2010, v. 433(5), p. 1-4. Full-text PDF
  2. Only in Russian Dokrunova A.A., Ulasova N.Yu., Kramina T.E., Albickiy I.A., Hasigov P.Z., Sokolova O.S. Polymorphism of alfa1-antitrypsin in cancer and prostatic hyperplasia. Russian Journal of molecular medicine, 2010, v. 6, p. 43-49.
  3. Shishkin S.S., Kovalev L.I., Kovaleva M.A., Krahmaleva I.N., Lisitskaya K.V., Eremina L.S., Ivanov A.V., Gerasimov E.V., Sadihov E.G., Ulasova N.Yu., Sokolova O.S., Toropigin I.Yu., Popov V.O. "Prostate cancer proteomics" database. Acta Naturae, 2010, v. 2(4), p. 95-104. Full-text PDF
  4. Only in Russian O.S.Sokolova. How to see «nano»? Priroda, 2010, v. 9, p. 38-43. Full-text PDF
  5. Sokolova O.S., Bogush V.G., Davydova L.I., Polevova S.V., Antonov S.A., Neretina T.V., Klinov D.V., Debabov V.G., Kirpichnikov M.P. The formation of a quaternary structure by recombinant analogs of spider silk proteins. Mol Biology, 2010, v. 44(1), p. 150-157. [abs]Full-text PDF
  6. Sokolova O., Filchikov M., Pechnikova E., Miroshnikov K. Structure and Virulence of Pseudomonas Aeruginosa Bacteriophages. Microsc. Microanal., 2010, v. 16 (Suppl 2). Full-text PDF

2009

  1. Agapov I.I., Pustovalova O.L., Moisenovich M.M., Bogush V.G., Sokolova O.S., Sevastyanov V.I., Debabov V.G., Gotye S.V., Kirpichnikov M.P. Recombinant silk scaffold for tissue engineering. Rare metals, 2009, v. 28, p. 84-87.
  2. Agapov I.I., Pustovalova O.L., Moisenovich M.M., Bogush V.G., Sokolova O.S., Sevastyanov V.I., Debabov V.G., Gotye S.V., Kirpichnikov M.P. Three-Dimensional Scaffold Made from Recombinant Spider Silk Protein for Tissue Engineering. Doklady Biochemistry and Biophysics, 2009, v. 426(1), p. 127-130. [abs]Full-text PDF
  3. Bogush V.G., Sokolova O.S., Davydova L.I., Klinov D.V., Sidoruk K.V., Esipova N.G., Neretina T.V., Orchanskyi I.A., Makeev V.Yu., Tumanyan V.G., Shaytan K.V., Debabov V.G., Kirpichnikov M.P. A novel model system for design of biomaterials based on recombinant analogs of spider silk proteins. J Neuroimmune Pharmacol., 2009, v. 4(1), p. 17-27. [abs]Full-text PDF
  4. Pischalnikova A.V. and Sokolova O.S. The domain and conformational organization in potassium voltage-gated ion channels. Journal of Neuroimmune Pharmacology, 2009, v. 4(1), p. 71-82. [abs]Full-text PDF
  5. Only in Russian Pustovalova O.L., Moisenovich M.M., Eremin P.S., Archipova A.Yu., Ramonova A.A., Sokolova O.S., Bogush V.G., Agapov I.I., Kirpichnikov M.P. Cultivating cells on three-dimensional matrix of a recombinant spidroin. Russian immunological journal, 2009, v. 3(12), part. 2, p. 139-146.

2008

  1. Sinitsyna N., Orshansky I., Sokolova O. Actin-binding proteins – how to reval the conformational changes. Journal of Bioinformatics and Computational Biology, 2008, v. 6(4), p. 869–884. [abs]Full-text [PDF]

Before 2008

  1. Paley E.L., Denisova G., Sokolova O., Posternak N., Wang X., and Brownell A.-L. Tryptamine Induces Tryptophanyl-tRNA Synthetase-Mediated Neurodegeneration With Neurofibrillary Tangles in Human Cell and Mouse Models. Neuro Molecular Medicine, 2007, v. 9, p. 55-82. [abs]Full-text [PDF]
  2. Paley E.L., Smelyanski L., Malinovskii V., Subbarayan P.R., Berdichevsky Y., Posternak N., Gershoni J.M., Sokolova O., Denisova G. Mapping and molecular characterization of novel monoclonal antibodies to conformational epitopes on NH2 and COOH termini of mammalian Tryptophanyl-tRNA Synthetase reveal link of the epitopes to aggregation and Alzheimer's disease. Mol Immunol., 2007, v. 44(4), p. 541-557. [abs]Full-text [PDF]
  3. Rodal A.A., Sokolova O., Robins D., Hippenmeyer S., Riezman H., Grigorieff N., Goode B.L. Conformational changes in the Arp2/3 complex leading to actin nucleation. Nat. Struct. Mol. Biol., 2005, v. 12(1), p. 26-31. [abs]Full-text [PDF]
  4. Sokolova O. Structure of cation channels, revealed by single particle electron microscopy. FEBS Lett., 2004, v. 564(3), p. 251-256. [abs]Full-text [PDF]
  5. Sokolova O., Accardi A., Gutierrez D., Lau A., Rigney M., Grigorieff N. Conformational changes in the C terminus of Shaker K+ channel bound to the rat Kvbeta2-subunit. Proc. Natl. Acad. Sci. U.S.A., 2003, v. 100(22), p. 12607-12612. [abs]Full-text [PDF]
  6. Sokolova O., Kolmakova-Partensky L., Grigorieff N. Three-dimensional structure of a voltage-gated potassium channel at 2.5 nm resolution. Structure, 2001, v. 9, p. 215-220. [abs]Full-text [PDF]
  7. Sokolova O.S. Immunochemical methods in aeropalinology. Aerosols, 1996, v. 2(2), p. 21-24.
  8. Only in Russian E.V.Titov, O.S.Sokolova and A.D.Volodarsky. Distribution of lectins throughout Grape stem tissues. Russian journal of plant physiology, 1992, v. 39(1), part. 1, p. 23-28.
  9. Only in Russian Volodarskiy A.D., Sumaroka A.D., Sokolova O.S., Evseeva N.V., Schegolev S.Yu. The study of the molecular and cellular bases of the synthesis of the proliferative antigen of the initial division and cell differentiation in plants. Information Bulletin of the RFBR, 1998, v. 6(4), p. 417-417.